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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11591650_11591754_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11591650 - 11591754
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTACTGGGG
5'SS Class:
weak_major
3'SS Sequence:
CTTGTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
AGGTCCACACCG
Flanking Amino Acid:
DAPNAGGPHIECLAPDALRR
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.7
0.18
1.2
43
44.3
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
83
0.74
0.8
77.2
31.6
Minor 5ss
28.1
-2.5
3.6
37.5
47.2
Minor BPS
42.9
-0.6
2.1
48.04
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001287
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026372
11590408 - 11594215
3808
ENSAPLT00000019314
11589408 - 11594235
4828
ENSAPLT00000001312
11590408 - 11594235
3828