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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11595507_11597866_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11595507 - 11597866
Intron Length:
2360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCTTG
5'SS Class:
major
3'SS Sequence:
GCTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAG
U12 Branch Point Sequence:
CCATCCTGAGGG
Flanking Amino Acid:
KEPEIELFVKAGLDGENIGN
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.8
42.7
Major BPS
54.8
0.12
1.6
53.3
44.2
Major PPT
72.3
0.5
0.8
65.6
30.3
Minor 5ss
40.6
-1
3.3
54.5
49.7
Minor BPS
43.8
-0.6
2
44.76
47

Associated Gene:

Gene:
CLIC2
Ensembl Gene ID:
ENSAPLG00000000963
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000954
11595459 - 11599199
3741