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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11598933_11599037_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11598933 - 11599037
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCCTCCTCC
Flanking Amino Acid:
NLLPKLHIIKIAAKKYRDFE
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.8
33.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
85.4
0.8
0.7
77.3
31.4
Minor 5ss
29.5
-2.3
3.4
38.8
46.5
Minor BPS
43.2
-0.5
3.7
74.6
42.2

Associated Gene:

Gene:
CLIC2
Ensembl Gene ID:
ENSAPLG00000000963
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038112
11597867 - 11599579
1713
ENSAPLT00000000954
11595459 - 11599199
3741