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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11610451_11610743_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11610451 - 11610743
Intron Length:
293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCTGATGTGATC
Flanking Amino Acid:
LCMPFNFAYTAIFNVLGLPV
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
79
0.72
1
69
38.9
Major PPT
88.3
0.86
0.7
80.7
31.3
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
42.2
-0.6
2.1
53.24
39.6

Associated Gene:

Gene:
FAAH2
Ensembl Gene ID:
ENSAPLG00000016066
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016756
11609275 - 11615302
6028