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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11610939_11611250_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11610939 - 11611250
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCGCA
5'SS Class:
major
3'SS Sequence:
CCTTGCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTGCCCTTGCCC
Flanking Amino Acid:
GMSSHTLPAIALGLTEKLVK
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
66.3
39.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.7
0.6
0.8
69.5
31.2
Minor 5ss
37.1
-1.5
3.3
48.7
47
Minor BPS
44.2
-0.4
3.4
64.09
41.7

Associated Gene:

Gene:
FAAH2
Ensembl Gene ID:
ENSAPLG00000016066
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016756
11609275 - 11615302
6028