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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11611944_11612524_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11611944 - 11612524
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTTGC
5'SS Class:
major
3'SS Sequence:
GTTCCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACGGAT
U12 Branch Point Sequence:
GATTTGCGAGCA
Flanking Amino Acid:
LRVMAGPGVHKLKLNEKVSL
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
66.9
40
Major BPS
48.5
-0
1.3
46.7
38.9
Major PPT
83
0.74
0.8
76.8
31.7
Minor 5ss
40.9
-1
3.1
51.9
39.6
Minor BPS
37.6
-0.9
2.3
50.89
40

Associated Gene:

Gene:
FAAH2
Ensembl Gene ID:
ENSAPLG00000016066
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016756
11609275 - 11615302
6028