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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11613463_11613843_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11613463 - 11613843
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TTTGCTTTATTT
Flanking Amino Acid:
DLQRIVGGSSGGEGGVLAAA
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.4
40.3
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
80.8
0.69
0.9
76.5
32
Minor 5ss
34.3
-1.8
2.8
40.4
45.5
Minor BPS
65.7
0.57
1.7
83.14
39

Associated Gene:

Gene:
FAAH2
Ensembl Gene ID:
ENSAPLG00000016066
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016756
11609275 - 11615302
6028