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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11732413_11732935_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11732413 - 11732935
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGGTCTCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
ACTTACTGAAAC
Flanking Amino Acid:
KLLEGLDYLTAPNPPSVREE
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
72.1
0.5
0.9
66.1
35.8
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
53
0.07
1.8
64.44
40.3

Associated Gene:

Gene:
MID2
Ensembl Gene ID:
ENSAPLG00000015609
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016282
11696661 - 11741157
44497