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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11751761_11753002_F

Intron Information:

Intron Rank:
147925
Intron Class:
major
Intron Phase:
Intron Coordinates:
11751761 - 11753002
Intron Length:
1242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCGTCTG
5'SS Class:
major
3'SS Sequence:
TTATTGATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTTCTCTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.2
65
46.4
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
81
0.7
0.9
78.2
39.7
Minor 5ss
33.1
-1.9
3
41.8
44.7
Minor BPS
59.9
0.39
1.9
84.55
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029630
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021825
11751057 - 11753399
2343