About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11780171_11796607_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11780171 - 11796607
Intron Length:
16437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTGCTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCCCTCTCATTC
Flanking Amino Acid:
PEQPAAHCDVATSNLDLESK
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
33.4
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
74.2
0.54
0.8
68.1
32
Minor 5ss
42.4
-0.8
2.8
51.5
44.9
Minor BPS
45.2
-0.3
1.7
51
40.6

Associated Gene:

Gene:
NHSL2
Ensembl Gene ID:
ENSAPLG00000022721
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021795
11779864 - 11804787
24924