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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11786296_11796607_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11786296 - 11796607
Intron Length:
10312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTGCTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCCCTCTCATTC
Flanking Amino Acid:
RGRPLRGADPATSNLDLESK
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
69.7
41.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
74.2
0.54
0.8
68.1
32
Minor 5ss
39.1
-1.2
3
51.7
45
Minor BPS
45.2
-0.3
1.7
51
40.6

Associated Gene:

Gene:
NHSL2
Ensembl Gene ID:
ENSAPLG00000022721
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021412
11785296 - 11804787
19492