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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11796761_11797472_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11796761 - 11797472
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
GTTTCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGGCAG
U12 Branch Point Sequence:
GCAGCTGGAGCA
Flanking Amino Acid:
AQLNLQSLLQEEYEEQYESR
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
39.6
-0.6
1.7
46.5
47
Major PPT
83.9
0.76
0.8
77.6
31.1
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
36.7
-1
2.1
41.26
39.6

Associated Gene:

Gene:
NHSL2
Ensembl Gene ID:
ENSAPLG00000022721
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030629
11790366 - 11804787
14422
ENSAPLT00000021795
11779864 - 11804787
24924
ENSAPLT00000021412
11785296 - 11804787
19492
ENSAPLT00000020624
11790366 - 11805182
14817