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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11798018_11798604_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11798018 - 11798604
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGCCAG
5'SS Class:
major
3'SS Sequence:
GTTTTGGCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGGCAC
U12 Branch Point Sequence:
TTTTGGCTACAG
Flanking Amino Acid:
QTNVVPINVSGQHFARHASA
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
50.6
47.7
Major BPS
46.5
-0.2
1.4
54.8
42.1
Major PPT
76.2
0.59
1
68.9
42
Minor 5ss
35.4
-1.7
3.3
38.2
46.8
Minor BPS
36.9
-1.1
2.7
52.92
47.4

Associated Gene:

Gene:
NHSL2
Ensembl Gene ID:
ENSAPLG00000022721
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030629
11790366 - 11804787
14422
ENSAPLT00000021795
11779864 - 11804787
24924
ENSAPLT00000021412
11785296 - 11804787
19492
ENSAPLT00000020624
11790366 - 11805182
14817