About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11801472_11801580_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11801472 - 11801580
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTCCCTGCAAAC
Flanking Amino Acid:
AQAAETPLEQGSLSEAGTEE
Intron Amino Acid Position:
1038

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
76.4
32.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
63
0.29
1
58
36.4
Minor 5ss
28.3
-2.5
3.6
40.1
46.3
Minor BPS
40.7
-0.7
2.1
48.74
41.4

Associated Gene:

Gene:
NHSL2
Ensembl Gene ID:
ENSAPLG00000022721
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021795
11779864 - 11804787
24924
ENSAPLT00000021412
11785296 - 11804787
19492
ENSAPLT00000020624
11790366 - 11805182
14817
ENSAPLT00000030629
11790366 - 11804787
14422