About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11801714_11801920_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11801714 - 11801920
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
CTGCTCCCACCA
Flanking Amino Acid:
TTEDLFTVIHRSKRKVLGRK
Intron Amino Acid Position:
1082

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
70.4
42.5
Major BPS
50
0
1.2
61.8
35.9
Major PPT
70.5
0.46
0.9
69.5
36.8
Minor 5ss
38.9
-1.2
3.6
54.5
49.7
Minor BPS
40.2
-0.7
2
49.07
41.7

Associated Gene:

Gene:
NHSL2
Ensembl Gene ID:
ENSAPLG00000022721
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030629
11790366 - 11804787
14422
ENSAPLT00000021795
11779864 - 11804787
24924
ENSAPLT00000021412
11785296 - 11804787
19492
ENSAPLT00000020624
11790366 - 11805182
14817