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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11804503_11804597_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11804503 - 11804597
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
CCGTCCTTAACC
Flanking Amino Acid:
QYSEDKARQGGDLGWMSRGS
Intron Amino Acid Position:
1175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
73.4
43.3
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
88.3
0.86
0.6
84.5
23.3
Minor 5ss
35.4
-1.7
3.2
40.5
45.5
Minor BPS
76.9
0.83
1.3
73.81
43.4

Associated Gene:

Gene:
NHSL2
Ensembl Gene ID:
ENSAPLG00000022721
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020624
11790366 - 11805182
14817