About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1180598_1181412_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1180598 - 1181412
Intron Length:
815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
CCTTGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
TGCACGCTGACG
Flanking Amino Acid:
VPAVEEPGKPGSVNQNGQET
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
79.7
0.67
0.8
72.8
32
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
41.9
-0.7
2.3
48.99
44.5

Associated Gene:

Gene:
EFNB1
Ensembl Gene ID:
ENSAPLG00000027844
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022343
1180169 - 1191772
11604