Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11810116_11810559_R

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

11810116 - 11810559

Intron Length:

444

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCC|GTATCCTCG

5'SS Class:

minor

3'SS Sequence:

CCCCCTGGCCCAG|C

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

CCTTGAC

U12 Branch Point Sequence:

TGCCCCTTGACT

Flanking Amino Acid:

CLDTSIPETIPGSNHSVAEA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

46.3

-0.2

1.4

38.1

42.3

Major BPS

61.6

0.29

1.1

54.6

40.8

Major PPT

60.4

0.23

51.9

36.7

Minor 5ss

76.8

0.9

1.5

78.1

36.6

Minor BPS

73.8

0.83

1.2

81.91

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020162

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040424

11808926 - 11814493

5568