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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11819681_11819756_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11819681 - 11819756
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCAGA
5'SS Class:
major
3'SS Sequence:
ATTCTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
AGTTTCTGACGG
Flanking Amino Acid:
FLAEVQSIQEAQLKSSLPDH
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
68.9
43.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
88.6
0.87
0.7
81
36
Minor 5ss
38.3
-1.3
2.8
40.4
45.5
Minor BPS
44.6
-0.5
2
50.81
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014140
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014793
11818905 - 11831431
12527