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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11827376_11830966_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11827376 - 11830966
Intron Length:
3591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAACTTTT
5'SS Class:
major
3'SS Sequence:
TGCACCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATCAT
U12 Branch Point Sequence:
GCTTCTGGACCT
Flanking Amino Acid:
KPVSALFHIGPNATSPAGHR
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
78.8
38.3
Major BPS
63.3
0.33
1.2
65.6
39.7
Major PPT
65
0.34
0.9
54.6
36.4
Minor 5ss
54.4
0.15
2.5
67.5
43.6
Minor BPS
44.3
-0.3
2.3
64.89
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014140
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045900
11818905 - 11831431
12527