Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1183233_1191285_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1183233 - 1191285

Intron Length:

8053

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTACGTGCG

5'SS Class:

major

3'SS Sequence:

CCTTCCCTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTTAAC

U12 Branch Point Sequence:

GAGCCCTTAACC

Flanking Amino Acid:

SPSPGAPATPTTSNGTLDGL

Intron Amino Acid Position:

163

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

1.1

63.6

41.1

Major BPS

64.7

0.37

1.1

67.2

35.2

Major PPT

82.7

0.74

0.7

75.9

26.2

Minor 5ss

33.6

-1.9

3.3

41.1

39.4

Minor BPS

71.5

0.66

1.3

70.4

40.2

Associated Gene:

Gene:

EFNB1

Ensembl Gene ID:

ENSAPLG00000027844

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022343

1180169 - 1191772

11604