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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11836554_11836628_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11836554 - 11836628
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAGGTGCT
5'SS Class:
major
3'SS Sequence:
CCCCTTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAG
U12 Branch Point Sequence:
CCCCCCCTGAGG
Flanking Amino Acid:
GIGNFLSVHEWPVGFQSNNV
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.2
63.7
39.3
Major BPS
47
-0.1
1.5
42.6
40.4
Major PPT
73.7
0.53
0.7
68.2
25.4
Minor 5ss
35.9
-1.6
3.6
50.4
46
Minor BPS
41.9
-0.7
2
40.33
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022336
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019659
11836273 - 11837623
1351