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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11837247_11837404_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11837247 - 11837404
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGA
5'SS Class:
major
3'SS Sequence:
CCTCTGGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGGGAC
U12 Branch Point Sequence:
ACCGCCGGGACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
64.2
42.1
Major BPS
43.7
-0.3
1.4
38.2
41.7
Major PPT
74.7
0.56
0.9
67.9
37.6
Minor 5ss
27.5
-2.6
3.6
38.1
46.8
Minor BPS
41.9
-0.6
2.2
48.63
42.3

Associated Gene:

Gene:
SASH3
Ensembl Gene ID:
ENSAPLG00000019773
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044211
11837148 - 11842048
4901