About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11839914_11839986_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11839914 - 11839986
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CCGCTTCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCACCAA
U12 Branch Point Sequence:
CTCCCCGGCACC
Flanking Amino Acid:
MAVKALAEGKQAEAEEEGSP
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
42.7
-0.4
1.2
44.4
36.6
Major PPT
70
0.45
0.8
61.2
35.1
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
40.7
-0.7
2.4
52.11
45.1

Associated Gene:

Gene:
SASH3
Ensembl Gene ID:
ENSAPLG00000019773
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044211
11837148 - 11842048
4901