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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11900698_11902618_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11900698 - 11902618
Intron Length:
1921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTGTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGCAA
U12 Branch Point Sequence:
CTCTGTGCAATT
Flanking Amino Acid:
FVYFTMAISKLKAQSQGSLE
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
67.6
39.4
Major BPS
50.7
0.02
1.5
63.4
44.3
Major PPT
81.7
0.71
0.9
73.1
42.1
Minor 5ss
32.7
-2
3
39.6
45.9
Minor BPS
40.8
-0.6
2.4
58.73
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030810
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017539
11900458 - 11906147
5690