About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11902766_11903067_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11902766 - 11903067
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCACG
5'SS Class:
major
3'SS Sequence:
TCTAATGGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TCTTCTCTAATG
Flanking Amino Acid:
ANTIKAYVAVVTENMAHRSV
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
64.1
41.7
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
68.6
0.42
1.1
65.2
45.1
Minor 5ss
34.4
-1.8
2.8
38
40.8
Minor BPS
61.8
0.23
1.7
67.5
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030810
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017539
11900458 - 11906147
5690