About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11903728_11904096_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11903728 - 11904096
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CCTTGCTGACCC
Flanking Amino Acid:
TLRPQSLALDGISKRFGNLS
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.5
40.3
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
80
0.68
0.7
72.7
32.1
Minor 5ss
34.3
-1.8
2.8
37.3
42.5
Minor BPS
46.4
-0.3
2.2
58.45
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030810
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017539
11900458 - 11906147
5690