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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11915796_11917996_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11915796 - 11917996
Intron Length:
2201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GGTTATTTAACC
Flanking Amino Acid:
VLRRDLIISIENARKKQDGI
Intron Amino Acid Position:
725

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
75.4
34.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.9
0.79
0.7
78
36.4
Minor 5ss
33.5
-1.9
3.1
42.4
44.3
Minor BPS
67.9
0.54
1.5
73.16
37.2

Associated Gene:

Gene:
CLCN5
Ensembl Gene ID:
ENSAPLG00000011775
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041032
11914476 - 11954521
40046
ENSAPLT00000038268
11914476 - 11954006
39531
ENSAPLT00000021705
11914476 - 11956536
42061
ENSAPLT00000012290
11914476 - 11941754
27279