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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11918396_11919265_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11918396 - 11919265
Intron Length:
870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGTTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ACGTGTTAATGT
Flanking Amino Acid:
YAMVGAAACLGGVTRMTVSL
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
81.4
32.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
74
0.54
0.9
69
37
Minor 5ss
39.7
-1.2
2.9
51.2
45.7
Minor BPS
36.9
-0.9
2.2
48.68
45.3

Associated Gene:

Gene:
CLCN5
Ensembl Gene ID:
ENSAPLG00000011775
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038268
11914476 - 11954006
39531
ENSAPLT00000021705
11914476 - 11956536
42061
ENSAPLT00000012290
11914476 - 11941754
27279
ENSAPLT00000041032
11914476 - 11954521
40046