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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11919453_11920735_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11919453 - 11920735
Intron Length:
1283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
AATGCCTTATTC
Flanking Amino Acid:
FITIFTFGMKVPSGLFIPSM
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
84.1
26.5
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
84.2
0.77
0.7
80.5
31.5
Minor 5ss
30.9
-2.2
3.5
46.6
48.7
Minor BPS
58.3
0.24
1.7
65.8
40.1

Associated Gene:

Gene:
CLCN5
Ensembl Gene ID:
ENSAPLG00000011775
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041032
11914476 - 11954521
40046
ENSAPLT00000038268
11914476 - 11954006
39531
ENSAPLT00000021705
11914476 - 11956536
42061
ENSAPLT00000012290
11914476 - 11941754
27279