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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11921279_11922169_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11921279 - 11922169
Intron Length:
891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACACCA
5'SS Class:
major
3'SS Sequence:
TTTCCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTGAT
U12 Branch Point Sequence:
AAGTGATTGAGT
Flanking Amino Acid:
IGGVLFSLEEVSYYFPLKTL
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
65.3
40.7
Major BPS
64.7
0.36
1.2
55.1
42.1
Major PPT
89
0.88
0.6
88.7
20.6
Minor 5ss
37.8
-1.4
3.1
49.4
46.3
Minor BPS
43.2
-0.4
2.2
59.1
44.1

Associated Gene:

Gene:
CLCN5
Ensembl Gene ID:
ENSAPLG00000011775
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012290
11914476 - 11941754
27279
ENSAPLT00000041032
11914476 - 11954521
40046
ENSAPLT00000038268
11914476 - 11954006
39531
ENSAPLT00000021705
11914476 - 11956536
42061