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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11922251_11923184_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11922251 - 11923184
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACGA
5'SS Class:
major
3'SS Sequence:
GTTTCTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
GTTTCTTTCATA
Flanking Amino Acid:
YRKNEAKRREVLSAAAAAGV
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
65
41
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
80.6
0.69
0.8
76.3
32.4
Minor 5ss
30.7
-2.2
3.1
39.6
45.7
Minor BPS
65.3
0.47
1.7
75.58
36.3

Associated Gene:

Gene:
CLCN5
Ensembl Gene ID:
ENSAPLG00000011775
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038268
11914476 - 11954006
39531
ENSAPLT00000021705
11914476 - 11956536
42061
ENSAPLT00000012290
11914476 - 11941754
27279
ENSAPLT00000041032
11914476 - 11954521
40046