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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11923392_11923940_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11923392 - 11923940
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
GCTTGACTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAA
U12 Branch Point Sequence:
GTGTGCTTGACT
Flanking Amino Acid:
PYACGSGIPEIKTILSGFII
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74
38.4
Major BPS
65.8
0.39
1
57.3
39.4
Major PPT
73.3
0.52
1
62.4
43.4
Minor 5ss
33.3
-1.9
2.8
38.7
46.6
Minor BPS
65.1
0.56
1.8
79.87
42.4

Associated Gene:

Gene:
CLCN5
Ensembl Gene ID:
ENSAPLG00000011775
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012290
11914476 - 11941754
27279
ENSAPLT00000041032
11914476 - 11954521
40046
ENSAPLT00000038268
11914476 - 11954006
39531
ENSAPLT00000021705
11914476 - 11956536
42061