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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11924064_11924676_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11924064 - 11924676
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGTGT
5'SS Class:
major
3'SS Sequence:
CTCTGCATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
AATTGGTTAACT
Flanking Amino Acid:
WSQLIIGHGEGAFAYILNYL
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.2
70.4
42.5
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
76.2
0.59
0.9
68.8
35.9
Minor 5ss
44
-0.7
3.3
65
46.2
Minor BPS
55.4
0.25
2.4
79.53
42.4

Associated Gene:

Gene:
CLCN5
Ensembl Gene ID:
ENSAPLG00000011775
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012290
11914476 - 11941754
27279
ENSAPLT00000041032
11914476 - 11954521
40046
ENSAPLT00000038268
11914476 - 11954006
39531
ENSAPLT00000021705
11914476 - 11956536
42061