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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11928611_11938870_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11928611 - 11938870
Intron Length:
10260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATATTC
5'SS Class:
strong_major
3'SS Sequence:
ACTCCCCCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AAATTCTCAATT
Flanking Amino Acid:
DDPPLDREMGGFSSYNGGEM
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
77.9
31
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
66.8
0.38
0.9
63.8
31.9
Minor 5ss
42.6
-0.8
3.1
59.6
45
Minor BPS
61.4
0.43
1.5
72.69
38

Associated Gene:

Gene:
CLCN5
Ensembl Gene ID:
ENSAPLG00000011775
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038268
11914476 - 11954006
39531
ENSAPLT00000021705
11914476 - 11956536
42061
ENSAPLT00000012290
11914476 - 11941754
27279
ENSAPLT00000041032
11914476 - 11954521
40046