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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11939021_11941708_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11939021 - 11941708
Intron Length:
2688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGTATG
5'SS Class:
major
3'SS Sequence:
CCCTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TGTGCTCTAAAA
Flanking Amino Acid:
LKPWEHPEPFGLEVLAMDQK
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.7
41.5
Major BPS
73
0.57
1
73.6
28.6
Major PPT
88.4
0.86
0.6
86.9
23.7
Minor 5ss
38.4
-1.3
3
47.6
42.5
Minor BPS
50.6
0.01
1.9
66.08
40.1

Associated Gene:

Gene:
CLCN5
Ensembl Gene ID:
ENSAPLG00000011775
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012290
11914476 - 11941754
27279