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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11939021_11953810_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11939021 - 11953810
Intron Length:
14790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAAAT
5'SS Class:
major
3'SS Sequence:
CCCTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TGTGCTCTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
76.8
33.7
Major BPS
73
0.57
1
73.6
28.6
Major PPT
88.4
0.86
0.6
86.9
23.7
Minor 5ss
29.3
-2.4
2.9
32.2
42.1
Minor BPS
50.6
0.01
1.9
66.08
40.1

Associated Gene:

Gene:
CLCN5
Ensembl Gene ID:
ENSAPLG00000011775
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038268
11914476 - 11954006
39531