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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11954210_11956321_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11954210 - 11956321
Intron Length:
2112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGAATA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTTAC
U12 Branch Point Sequence:
CTCGCCTGAGCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
73.7
36.9
Major BPS
54.8
0.12
1.1
47.1
37.6
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
36.1
-1.6
3.2
45.7
44.4
Minor BPS
48.8
-0
1.9
59.78
46.1

Associated Gene:

Gene:
CLCN5
Ensembl Gene ID:
ENSAPLG00000011775
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021705
11914476 - 11956536
42061