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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11975312_11976183_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11975312 - 11976183
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCTTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATAAT
U12 Branch Point Sequence:
TAATCTGTAACT
Flanking Amino Acid:
KSSWGPDGQEIPGNKMTVSN
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
66.4
0.41
1.1
66.3
36.5
Major PPT
68.6
0.42
1
62.3
44.3
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
64
0.52
2
81.94
39.4

Associated Gene:

Gene:
ARHGAP36
Ensembl Gene ID:
ENSAPLG00000011085
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011538
11973419 - 11981120
7702