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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11976766_11977179_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11976766 - 11977179
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
TTCTATCTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTTCTCATTT
Flanking Amino Acid:
VGSSKKRVQQLREEFDHGLD
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75.6
0.58
1
79.5
32.6
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
55.5
0.25
1.8
75.31
42.2

Associated Gene:

Gene:
ARHGAP36
Ensembl Gene ID:
ENSAPLG00000011085
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011538
11973419 - 11981120
7702