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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11977965_11978028_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11977965 - 11978028
Intron Length:
64

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTTACCAGA
5'SS Class:
weak_major
3'SS Sequence:
TTCTTGGCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
CCTATCATGACA
Flanking Amino Acid:
YGGRKLRKTKTFMTSPPSQG
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.4
0.08
1.3
54.7
44.2
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
75.5
0.57
0.9
73.5
37.1
Minor 5ss
42.4
-0.8
2.6
50.4
40.2
Minor BPS
49.2
-0
1.7
59.34
40.6

Associated Gene:

Gene:
ARHGAP36
Ensembl Gene ID:
ENSAPLG00000011085
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011538
11973419 - 11981120
7702