About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11978567_11980948_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11978567 - 11980948
Intron Length:
2382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ATTCCTTCCATG
Flanking Amino Acid:
LLVGDLSLAKDYSPQTFGIP
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73
38.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
29.5
-2.3
3.8
45.4
49.7
Minor BPS
46
-0.4
2
55.23
40.6

Associated Gene:

Gene:
ARHGAP36
Ensembl Gene ID:
ENSAPLG00000011085
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011538
11973419 - 11981120
7702