About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_11981071_11981118_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11981071 - 11981118
Intron Length:
48

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
TGCCAAGCTAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTATCTCAGCT
Flanking Amino Acid:
ITEMQPVSLH
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
82.6
30.5
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
51.5
0.03
1.1
48.5
38.4
Minor 5ss
66.3
0.55
2.2
79.9
33.6
Minor BPS
58.1
0.33
1.8
80.97
40.5

Associated Gene:

Gene:
ARHGAP36
Ensembl Gene ID:
ENSAPLG00000011085
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011538
11973419 - 11981120
7702