About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12038503_12038938_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12038503 - 12038938
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TGTCTCATAACT
Flanking Amino Acid:
YKGTLDGLVKTWKSEGFFAL
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
84.2
0.77
0.7
79.2
26.3
Minor 5ss
31.7
-2.1
3.1
39.7
45.9
Minor BPS
66
0.58
1.6
83.32
36.9

Associated Gene:

Gene:
SLC25A14
Ensembl Gene ID:
ENSAPLG00000010152
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010579
12037604 - 12044459
6856