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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12040268_12041284_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12040268 - 12041284
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
TTGTGCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
GTGCTTGTGACT
Flanking Amino Acid:
QQEGTRGLWRGVVPTAQRAA
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
65.8
40.2
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
72.7
0.51
0.9
66.4
35.7
Minor 5ss
34.8
-1.7
2.8
36.3
40.5
Minor BPS
46.5
-0.2
2
64.15
40.8

Associated Gene:

Gene:
SLC25A14
Ensembl Gene ID:
ENSAPLG00000010152
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010579
12037604 - 12044459
6856