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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12042139_12043274_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12042139 - 12043274
Intron Length:
1136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCGGTGTC
5'SS Class:
major
3'SS Sequence:
TTCTTGGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
ACCTTCAGAATC
Flanking Amino Acid:
LKRLFVDRLEDETLLINVIC
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.3
74.2
36
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
81.7
0.71
0.9
76.2
37.8
Minor 5ss
31.3
-2.1
3.4
43.4
44.3
Minor BPS
47
-0.2
1.7
53.79
38.3

Associated Gene:

Gene:
SLC25A14
Ensembl Gene ID:
ENSAPLG00000010152
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010579
12037604 - 12044459
6856