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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12044320_12044395_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12044320 - 12044395
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGGAGC
5'SS Class:
major
3'SS Sequence:
GCTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GGTTCTCTGACG
Flanking Amino Acid:
GGLASIVAEFGTFPVDLTKT
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
64.2
41.9
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
72.3
0.5
0.8
65.6
30.3
Minor 5ss
27.6
-2.6
3
34.8
41.4
Minor BPS
53.8
-0
1.8
61.05
40.7

Associated Gene:

Gene:
SLC25A14
Ensembl Gene ID:
ENSAPLG00000010152
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010579
12037604 - 12044459
6856