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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12047103_12047180_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12047103 - 12047180
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
CGGTGTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GGGTGCTCACGG
Flanking Amino Acid:
TEGDVICVFSQYGEVVNINL
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
69.5
0.44
1.1
64.9
45.6
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
36.4
-1.1
2.2
36.67
45

Associated Gene:

Gene:
RBMX2
Ensembl Gene ID:
ENSAPLG00000010127
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010543
12045273 - 12047587
2315