About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12063511_12064991_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12063511 - 12064991
Intron Length:
1481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTGTCTAATA
Flanking Amino Acid:
KALLSRRCDTGNLLQRWNVP
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.2
36.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79.7
0.67
0.8
78.2
36
Minor 5ss
33.9
-1.8
3.7
46.6
43.5
Minor BPS
56.6
0.2
2
75.53
36.4

Associated Gene:

Gene:
AIFM1
Ensembl Gene ID:
ENSAPLG00000009272
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028051
12063312 - 12080400
17089
ENSAPLT00000020815
12063312 - 12080400
17089