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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_12064760_12064991_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12064760 - 12064991
Intron Length:
232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTTGTAGT
5'SS Class:
major
3'SS Sequence:
TTGTATTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTGTCTAATA
Flanking Amino Acid:
MVLLLIGNLLQRWNVP
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
68.3
42.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79.7
0.67
0.8
78.2
36
Minor 5ss
40
-1.1
2.5
49.3
41
Minor BPS
56.6
0.2
2
75.53
36.4

Associated Gene:

Gene:
AIFM1
Ensembl Gene ID:
ENSAPLG00000009272
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024644
12064741 - 12080400
15660